phylo2vec: a library for vector-based phylogenetic tree manipulation

作者：Neil Scheidwasser, Asish C. Nag, Matthew J. Penn, Anthony M.V. Jakob, Frederik Mølkjær Andersen, Mark P. Khurana, Landung Setiawan, David A. Duchêne, Samir Bhatt · 发表于：The Journal of Open Source Software · 年份：2025 · DOI：10.21105/joss.09040 · 被引用次数：1 · 研究领域：Genomics and Phylogenetic Studies、Genomics and Rare Diseases、Cancer Genomics and Diagnostics

Compared to the traditional Newick format which represents trees using strings of nested parentheses (Felsenstein, 2004), modern tree representations utilise integer vectors to define the tree topology traversal.This approach offers several advantages, including easier manipulation, increased memory efficiency, and applicability to machine learning.