A roadmap for equitable reuse of public microbiome data

作者：Laura A. Hug, Roland Hatzenpichler, Cristina Moraru, André Soares, Folker Meyer, Anke Heyder, Rabab Mahmoud Abdallah, A. Abdalrahem, Nafi’u Abdulkadir, Ibukun M. Adesiyan, L. Alteio, Karthik Anantharaman, R. Anderson, A. H. Andrei, J. Antonio Baeza, Frederik Bak, Brett J. Baker, Alexander Bartholomäus, Nicolás Bejerman, Jennifer F. Biddle, Andrew Bissett, J. Blakeley-Ruiz, K. A. Block, Joachim Boldt, Germán Bonilla‐Rosso, Till L. V. Bornemann, Verena S. Brauer, William J. Brazelton, Andreas Bremges, Elena Buelow, Zachary M. Burcham, Annabel Cansdale, J. Gregory Caporaso, Tomislav Cernava, Ioanna Chatzigiannidou, Rodrigo Costa, Cameron R. Currie, Anne Daebeler, V. De Anda, Ana de Santiago, Luísa Mayumi Arake de Tacca, Justine W. Debelius, Simon M. Dittami, Xu Dong, Mária Džunková, Arwyn Edwards, Robert A. Edwards, Susan Egbert, Julia C. Engelmann, S. P. Esser, Thijs J. G. Ettema, Cassandra L. Ettinger, Aleksandra Petrović Fabijan, Rebecca Ferguson, Patrizia Ferretti, Pierre Foucault, Jed A. Fuhrman, Andreas Gada, Patricia Geesink, Isabel Rodrigues Gerhardt, Mark O. Gessner, Donato Giovannelli, David I. Gittins, Gregory B. Gloor, Raúl A. González‐Pech, Chandana Gopalakrishnappa, Chris Greening, Rachel Gregor, Ann Gregory, Hans‐Peter Grossart, Mathieu Groussin, Bruno V. Guerrero, Mustafa Güzel, Natsuko Hamamura, Trinity L. Hamilton, Jon Hamm, Luke Hart, Christiane Hassenrück, Melanie Hay, Robert M. Hechler, Patrick Hellwig, Michael A. Henson, Michael Herold, Poppy Hesketh-Best, Matthias Hess, Luke S. Hillary, Thomas C. A. Hitch, Sai Suresh Hivarkar, Katharina J. Hoff, Erik Hom, Shengwei Hou, Luisa W. Hugerth, Yeongwoo Hwang, Nicholas E. Ilott, Zackary J. Jay, Sean P. Jungbluth, Elham Karimi, Y. M. Kaspareit, Ciara Keating, Matthew Kellom, E. Anders Kiledal, Ingeborg J. Klarenberg, Robert J. Knight, Angela Koech, Eugene V. Koonin, Konstantinos Ar. Kormas, Katharina Kujala, Nikos C. Kyrpides, Sabina Leanti La Rosa, Cédric C. Laczny, Kevin K. Lahmers, Xianyong Lan, A. A. Lateef, S. H. Lau, Florian Leese, María Ángeles Lezcano, S. S. Li, Rayane Nunes Lima, Sebastian Lücker, Alexander Mahnert, Sina Majidian, Lukas Malfertheiner, Andrew J. Marshall, Sean Meaden, Conor J. Meehan, Dimitri V. Meier, Chrats Melkonian, Daniel R. Mende, Julie L. Meyer, Grégoire Michoud, Vladimir Mikryukov, Samuel Miravet‐Verde, Jan Muschiol, Muhammad Kabiru Nata’ala, Josh D. Neufeld, Sigrid Neuhauser, Olayinka Osuolale, Jay Osvatic, Katherine M. Pappas, Daniel Parks, Renate Parry, P. V. Pascoal, Christina Pavloudi, Brent Peyton, Julia Plewka, Mathilde Poyet, Taylor Priest, E. K. Quaye, S. Ramganesh, Thomas Rattei, Philipp Rausch, Elíbio Rech, Christian Rinke, Carol Robinson, Alejandro Rodríguez-Gijón, Luis M. Rodriguez‐R, Robin R. Rohwer, Tim Roloff, Jennifer Rothman, Sonja Rückert, S. Emil Ruff, Jasmine Saini, Michel Geovanni Santiago‐Martínez, Luciana F. Santoferrara, Mohamed S. Sarhan, Jimmy H. Saw, Tomasa Sbaffi, Ralf B. Schäfer, George A. Schaible, Michael Schloter, Ruth A. Schmitz, Carsten J. Schubert, Oliver Schwengers, Luděk Sehnal, A. Chandrasekar, Jegan Sekar, Mitiku Mihiret Seyoum, Manesh Shah, Itai Sharon, Bettina Siebers, Ella T. Sieradzki, Dimitrios Skliros, Oona Snoeyenbos-West, Adam Sorbie, Daan R. Speth, C. Grace Sprehn, Pranay Srivastava, Tom L. Stach, Jason Stajich, Jeffrey R. Starke, Andrew D. Steen, Richard Stöckl, T. Stoikidou, Nejc Stopnišek, Rohan Sukumaran, Bernd Sures, Shino Suzuki, Daniel Tamarit, Patrick H. Thieringer, R. Y. Tito, Chetan Trivedi, Gareth Trubl, Jaak Truu, Myrto Tsiknia, Juan A. Ugalde, Luis E. Valentin-Alvarado, Xabier Vázquez-Campos, Julia Vierheilig, F. A. Bastiaan von Meijenfeldt, Michael Wagner, Calum J. Walsh, Shuqiang Wang, Yue Wang, Carl‐Eric Wegner, Tiffany L. Weir, L. Weiss, JL Weissman, Antje Wichels, Candace L. Williams, Travis Williams, Alexandra Z. Worden, Tanja Woyke, Mengxiong Wu, Wei Xiu, Ying Zhang, Jun Zhu, Ryan Ziels, Benjamin Zwirzitz, Alexander J. Probst · 发表于：Nature Microbiology · 年份：2025 · DOI：10.1038/s41564-025-02116-2 · 被引用次数：15 · 研究领域：Research Data Management Practices、Scientific Computing and Data Management、Genomics and Phylogenetic Studies

Science benefits from rapid open data sharing, but current guidelines for data reuse were established two decades ago, when databases were several million times smaller than they are today. These guidelines are largely unfamiliar to the scientific community, and, owing to the rapid increase in biological data generated in the past decade, they are also outdated. As a result, there is a lack of community standards suited to the current landscape and inconsistent implementation of data sharing policies across institutions. Here we discuss current sequence data sharing policies and their benefits and drawbacks, and present a roadmap to establish guidelines for equitable sequence data reuse, developed in consultation with a data consortium of 167 microbiome scientists. We propose the use of a Data Reuse Information (DRI) tag for public sequence data, which will be associated with at least one Open Researcher and Contributor ID (ORCID) account. The machine-readable DRI tag indicates that the data creators prefer to be contacted before data reuse, and simultaneously provides data consumers with a mechanism to get in touch with the data creators. The DRI aims to facilitate and foster collaborations, and serve as a guideline that can be expanded to other data types.