Annotating datasets in behavioural and social sciences to promote interoperability: development of the Schema for Ontology-based Dataset Annotation (SODA) version 1.0

作者：Robert West, Jamie Brown, Lion Shahab, Harriet M. Baird, Thomas L. Webb, Hazel Squires, Harry Tattan‐Birch, Duncan Gillespie, Robin C. Purshouse, Alan Brennan, Suvodeep Mazumdar, Vitaveska Lamfranchi, Susan Michie · 发表于：Wellcome Open Research · 年份：2025 · DOI：10.12688/wellcomeopenres.24234.1 · 被引用次数：3 · 研究领域：Biomedical Text Mining and Ontologies、Research Data Management Practices、Big Data and Business Intelligence

Background and aims Ontologies are increasingly employed to help find, use and synthesise information, but methods for using them to annotate documents and datasets remain in their infancy in the behavioural and social sciences. The Behavioural Research UK DEMO-DATA project aimed to develop a prototype schema for annotating datasets in behavioural and social sciences. Methods A case-study dataset (the ‘Smoking Toolkit Study’), used to inform an Agent-Based Model of trajectories in cigarette smoking and cessation in England, was chosen for annotation using two ontologies - The Behaviour Change Intervention Ontology (BCIO) and the Addiction Ontology (AddictO). The data set included 21 variables representing information about sociodemographic and tobacco and nicotine use attributes of the study population. A preliminary version of the schema for linking variables to ontology classes was developed as a basis for annotating each variable in the dataset. This was applied and revised iteratively until it was judged by an expert panel of domain experts and modellers to represent the variables sufficiently accurately to enable searching for and integration of data. Results The prototype Schema for Ontology-based Dataset Annotation (SODA) version 1.0 was developed over seven iterations. Variables were represented by an ‘object property’|‘ontology class’ expression (e.g., ‘has characteristic’|‘extent of social smoking’) together with information about the data types (e.g., numbers, onto...