BioTIME 2.0: Expanding and Improving a Database of Biodiversity Time Series

作者：María Dornelas, Laura H. Antão, Amanda E. Bates, Viviana Brambilla, Jonathan M. Chase, Cher F. Y. Chow, Ada Fontrodona‐Eslava, Anne E. Magurran, Inês S. Martins, Faye Moyes, Alban Sagouis, Samuel Adu‐Acheampong, Daniel Acquah‐Lamptey, Dušan Adam, Penelope Ajani, Aitor Albaina, Pablo Almaraz, Jeong‐Seop An, Roger Sigismund Anderson, Madelaine Anderson, Alexsander Zamorano Antunes, Iván Arismendi, Linda Armbrecht, Pedro Aros‐Mardones, K. A. Sreejith, Narayanan Ayyappan, Gal Badihi, Joseph J. Bailey, Andrew H. Baird, Mark E. Baird, V. B. Sreekumar, José António Lemos Barão-Nóbrega, Adi Barash, Miguel Barbosa, Jos Barlow, Claus Bässler, Matthieu Beaumont, Natalie Beenaerts, Tiago Octavio Begot, Wallace Beiroz, Ricardo Beldade, David M. Bell, Alecia Bellgrove, Jonathan Belmaker, Lisandro Benedetti‐Cecchi, Cassandra E. Benkwitt, Pamela Medina‐van Berkum, Brandon T. Bestelmeyer, Matthew G. Betts, Maxwell Kelvin Billah, Anne D. Bjorkman, Magdalena Błażewicz, Christopher P. Bloch, Shane A. Blowes, Antonio Bode, Juliano A. Bogoni, Thomas Bolger, Timothy C. Bonebrake, Erik Bonsdorff, Roberta Bottarin, Luke N. Brokensha, Rob W. Brooker, Andrew J. Brooks, Helge Bruelheide, Thiago Almeida Bueno, Claire Laguionie, Mariana Lopes Campagnoli, James Cant, Érica Pellegrini Caramaschi, Alexandre Caron, Tadhg Carroll, Tancredi Caruso, Juan D. Carvajal‐Quintero, Giuseppe Castaldelli, Edward Castañeda‐Moya, Pedro Volkmer de Castilho, Sônia Zanini Cechin, Shahar Chaikin, U. M. Chandrashekara, Tory J. Chase, Chaolun Allen Chen, Jorge José Cherem, Sei‐Woong Choi, Erica M. Christensen, Alexander V. Christianini, Jackson W. F. Chu, Peter Coad, Carl Van Colen, Lise Comte, Elisabeth J. Cooper, Johannes H. C. Cornelissen, E. Cosson, Unai Cotano, Luc Crèvecoeur, Shannan K. Crow, Graeme S. Cumming, Vanessa S. Daga, Gabriella Damasceno, Gergana N. Daskalova, Claire H. Davies, Robert A. Davis, Frank P. Day, Sussy De‐La‐Zerda, Amy E. Deacon, Indradatta deCastro‐Arrazola, S. Degraer, Kharran Deonarinesingh, Juan C. Díaz‐Ricaurte, Chris R. Dickman, Tara Dirilgen, Ciarán J. Dolan, J. Emmett Duffy, Timothy E. Dunn, Giselda Durigan, Ciara Dwyer, Stevan Earl, Dor Edelist, Graham J. Edgar, Sally Edmondson, Ashley K. Elgin, Kari E. Ellingsen, Sarah C. Elmendorf, Ruth Eriksen, S. K. Morgan Ernest, Rubén Escribano, Paula Cabral Eterovick, Brian Evans, Jason D. Everett, Vesela Evtimova, Dan A. Exton, Andrew Fairbairn, Felipe Moreli Fantacini, Fabiano Turini Farah, Fábio Z. Farneda, Mario E. Favila, Philippe Fernandez‐Fournier, Braulio Fernández‐Zapata, Diogo F. Ferreira, Carola Ferronato, Christopher R. du Feu, Alessandra Fidélis, David A. Fifield, Vilmar Picinatto Filho, Walter Mesquita Filho, Robert N. L. Fitt, Carlos A. H. Flechtmann, William R. Fraser, Donna L. Fraser, Lídia Freixas, John M. Fryxell, Garrett J. Fundakowski, Scott S. Gabara, Elise Gallois, Mariana García Criado, Emili García‐Berthou, Joaquim Garrabou, Andrew R. Gates, Roberto Cazzolla Gatti, Anna Gavioli, Tal Gavriel, Benoît Gendreau-Berthiaume, Xingli Giam, Carina Gjerdrum, Michael Glemnitz, Jasmin A. Godbold, Daniel Gómez‐Gras, Rodrigo Barbosa Gonçalves, Andy Goold, Richard R. Gordon, Menachem Goren, Fernando Vilas Boas Goulart, William A. Gould, Meagan M. Grabowski, Nicholas A. J. Graham, Maurício Eduardo Graipel, Laura J. Grange, Aaron C. Greenville, Gary D. Grossman, Valeria A. Guinder, Peter Haase, Gary N. Haskins, Kris M. Havstad, Luise Hermanutz, Michael J. H. Hickford, Pamela Hidalgo, Pedro Higuchi, Andrew S. Hoey, Gert Van Hoey, Annika Hofgaard, Kristen T. Holeck, Robert D. Hollister, Richard T. Holmes, Mia O. Hoogenboom, Joaquín Hortal, Tammy Horton, Chih‐hao Hsieh, Christine L. Huffard, Ida‐Maria Huikkonen, Allen H. Hurlbert, Julian D. Hynes, Pascal Irz, Natália Macedo Ivanauskas, Akemi Iwayama, Darren K. James, Ute Jandt, Anna Jażdżewska, Merlijn Jocqué, S. Johnston, Samuel E. I. Jones, Faith A. M. Jones, Julia Jones, Edīte Juceviča, Uģis Kagainis, Maiko Kagami, Jungwon Kang, Xuejia Ke, Erin Keeley, Rebecca Kinnear, Kari Klanderud, Uwe Klinck, Roel van Klink, Stefan Klotz, C. Knockaert, Halvor Knutsen, Matti Koivula, Alessandra Kortz, Peter Kriegel, Chao‐Yang Kuo, David J. Kushner, Rosina Kyerematen, Raphaël Lagarde, Lesley T. Lancaster, Ori Frid, Wouter Van Landuyt, Eric R. Larson, Mai Lazarus, Cheol Min Lee, Jonathan S. Lefcheck, Jonas J. Lembrechts, Renato A. Ferreira de Lima, Romullo Guimarães de Sá Ferreira Lima, Nathália G. S. Lima, Cristina Linares, Sandra C. Lindstrom, Francisco Lloret, John D. Lloyd, Cleonice Maria Cardoso Lobato, David M. Lodge, Peter R. Long, Celeste López‐Abbate, Adrià López‐Baucells, Júlio Louzada, Maite Louzao, Antonella Lugliè, Micheli Ribeiro Luiz, S. Ellen Macdonald, Joshua S. Madin, André Lincoln Barroso Magalhães, Rajindra Mahabir, David Maphisa, Thomas E. Martin, Marcio Roberto Martins, Patrick T. Martone, Silvia Matesanz, Shin‐ichiro S. Matsuzaki, Thomas J. Matthews, Iain Matthews, Connie J. Maxwell, Kent P. McFarland, Brian J. McGill, Diane M. McKnight, Mike McWilliam, Jason Meador, Henning Meesenburg, Kristin Meier, Viesturs Melecis, Peter L. Meserve, Christoph F. J. Meyer, Anders Michelsen, Natali Oliva Roman Miiller, Marco Milardi, N. A. Milchakova, Robert J. Miller, Jonathan Millett, Tom Moens, Luciano Fogaça de Assis Montag, J. Moore, Jörg Müller, Akhil Murali, Shauna A. Murray, Isla H. Myers‐Smith, Randall W. Myster, Masahiro Nakamura, Sasi Nayar, Francis Neat, James A. Nelson, Michael Nelson, Boris P. Nikolov, Rym Nouioua, Collins Ayine Nsor, Michael O′Connor, Edward Adzesiwor Obodai, Amy Marie Offland, Romà Ogaya, Hisako OGURA, Thomas A. Okey, Julian D. Olden, Luiz Gustavo Rodrigues Oliveira‐Santos, Jeffrey C. Oliver, Esben Moland Olsen, V. G. Onipchenko, Daniel Oró, Dāvis Ozoliņš, Krzysztof Pabis, Bachisio Mario Padedda, Facundo X. Palacio, Alain Paquette, Sinta Trilestari Pardede, David M. Paterson, Sarah A. Pausina, Raphaël Pélissier, Steven C. Pennings, Josep Peñuelas, Felipe Walter Pereira, Nivaldo Peroni, Sergio Picó, Francesca Pilotto, Hudson T. Pinheiro, Oscar Pizarro, Roberto Pizzolotto, Francesco Pomati, Paulo dos Santos Pompeu, Dominique Ponton, Eric Post, Nicolas Poulet, Juha Pöyry, Steven J. Presley, H.H.T. Prins, Pieter Provoost, Kathleen L. Prudic, Vignesh Punjayil, Petr Pyšek, Pascal Querner, Juan P. Quimbayo, Indar W. Ramnarine, Daniel C. Reed, Peter B. Reich, Suzanne M. Remillard, Cerren Richards, Anthony J. Richardson, Itai van Rijn, Víctor H. Rivera‐Monroy, Christian Rixen, Kevin P. Robinson, Ricardo Rocha, Ricardo Ribeiro Rodrigues, Cassy Anne Rodrigues, Bjørn de Roos, Denise de Cerqueira Rossa‐Feres, Loreta Rosselli, Peter C. Rothlisberg, Ana Rubio, Lars G. Rudstam, Catalina S. Ruz, Nancy B. Rybicki, Gunther Van Ryckegem, Andrew L. Rypel, Jon P. Sadler, Victor S. Saito, Sofia Sal, Renato Portela Salomão, Nathan J. Sanders, Flavio Antônio Maës dos Santos, Tiágo Gomes dos Santos, Swapan Kumar Sarker, Sara E. Scanga, Marcus Schaub, Jochen Schmidt, Inger Kappel Schmidt, Robert L. Schooley, Alfred Schultz, Alberto Scotti, Amanda Serpell‐Stevens, Filipe C. Serrano, Elizabeth H. Shadwick, Matthew Shaft, Thomas W. Sherry, Erika Mayumi Shimabukuro, Jacek Siciński, Caya Sievers, Fernando Rodrigues da Silva, Ana Carolina da Silva, Juliana M. Silveira, Tadeu Siqueira, Arunkumar Kavidapadinjattathil Sivadasan, Prasad Theruvil Parambil Sivan, Agnija Skuja, Amalia L. Slaughter, Jasper A. Slingsby, Joseph R. Smith, Bruno Eleres Soares, Martin Solan, Flaviana Maluf Souza, Gabriel Barros Gonçalves de Souza, Joshua Sprague, Ulrich Stachow, J. John Stadt, Christopher D. Stallings, Radoslav Stanchev, Emily H. Stanley, Brian M. Starzomski, José Mauro Sterza, Maarten Stevens, F. Gary Stiles, Stefan Stoll, Rick D. Stuart‐Smith, Yzél Rondon Súarez, Laura Super, Sarah R. Supp, Tapio Sutela, Iain M. Suthers, Anna Suuronen, Kerrie M. Swadling, Daniel K. Szydlowski, Hisatomo Taki, Sara Jeanne Snell Taylor, Pablo A. Tedesco, Nils Teichert, Akira Terui, Gary P. Thiede, Anne Thimonier, Oliver Thomas, Peter A. Thompson, Simon Thorn, Jeremy S. Tiemann, Luı́s Felipe Toledo, Anne Tolvanen, Maria Teresa Zugliani Toniato, Ignasi Torre, Marcos Adriano Tortato, Kumiko Totsu, Andrew J. Trant, Robert R. Twilley, Hirokazu Urabe, Pierre Valade, Nelson Valdivia, Martha Isabel Vallejo, Thomas J. Valone, Jan Vanaverbeke, T. Vasconcelos, Teppo Vehanen, Fábio Venturoli, Hans M. Verheye, H.J.W. Vermeulen, Arne Verstraeten, Marcelo Vianna, Rui P. Vieira, João Paulo dos Santos Vieira‐Alencar, Marc Vilella, Jean Ricardo Simões Vitule, Vũ Văn Liên, Robert B. Waide, Paige S. Warren, Joseph P. Wayman, Sara L. Webb, Benjamin Weigel, Ellen A. R. Welti, Fritha West, Fulgor Westermann, Matthew A. Whalen, Ethan P. White, Claire E. Widdicombe, Richard Williams, Mark Williamson, Michael R. Willig, Sonja Wipf, Eric J. Woehler, Alje Woldering, Kerry D. Woods, Wubing Xu, Ruth Yahel, Z. Yang, Kyle Zawada, Camila Zornosa‐Torres, Assaf Zvuloni · 发表于：Global Ecology and Biogeography · 年份：2025 · DOI：10.1111/geb.70003 · 被引用次数：22 · 研究领域：Species Distribution and Climate Change、Environmental DNA in Biodiversity Studies、Genetic diversity and population structure

ABSTRACT Motivation Here, we make available a second version of the BioTIME database, which compiles records of abundance estimates for species in sample events of ecological assemblages through time. The updated version expands version 1.0 of the database by doubling the number of studies and includes substantial additional curation to the taxonomic accuracy of the records, as well as the metadata. Moreover, we now provide an R package (BioTIMEr) to facilitate use of the database. Main Types of Variables Included The database is composed of one main data table containing the abundance records and 11 metadata tables. The data are organised in a hierarchy of scales where 11,989,233 records are nested in 1,603,067 sample events, from 553,253 sampling locations, which are nested in 708 studies. A study is defined as a sampling methodology applied to an assemblage for a minimum of 2 years. Spatial Location and Grain Sampling locations in BioTIME are distributed across the planet, including marine, terrestrial and freshwater realms. Spatial grain size and extent vary across studies depending on sampling methodology. We recommend gridding of sampling locations into areas of consistent size. Time Period and Grain The earliest time series in BioTIME start in 1874, and the most recent records are from 2023. Temporal grain and duration vary across studies. We recommend doing sample‐level rarefaction to ensure consistent sampling effort through time before calculating any diversity metr...