Using an adaptive modeling framework to identify avian influenza spillover risk at the wild-domestic interface

作者：Diann J. Prosser, Cody M. Kent, Jeffery D. Sullivan, Kelly Patyk, Mary-Jane McCool, Mia Kim Torchetti, Kristina Lantz, Jennifer M. Mullinax · 发表于：Scientific Reports · 年份：2024 · DOI：10.1038/s41598-024-64912-w · 被引用次数：25 · 研究领域：Influenza Virus Research Studies、Animal Disease Management and Epidemiology、Viral Infections and Vectors

The wild to domestic bird interface is an important nexus for emergence and transmission of highly pathogenic avian influenza (HPAI) viruses. Although the recent incursion of HPAI H5N1 Clade 2.3.4.4b into North America calls for emergency response and planning given the unprecedented scale, readily available data-driven models are lacking. Here, we provide high resolution spatial and temporal transmission risk models for the contiguous United States. Considering virus host ecology, we included weekly species-level wild waterfowl (Anatidae) abundance and endemic low pathogenic avian influenza virus prevalence metrics in combination with number of poultry farms per commodity type and relative biosecurity risks at two spatial scales: 3 km and county-level. Spillover risk varied across the annual cycle of waterfowl migration and some locations exhibited persistent risk throughout the year given higher poultry production. Validation using wild bird introduction events identified by phylogenetic analysis from 2022 to 2023 HPAI poultry outbreaks indicate strong model performance. The modular nature of our approach lends itself to building upon updated datasets under evolving conditions, testing hypothetical scenarios, or customizing results with proprietary data. This research demonstrates an adaptive approach for developing models to inform preparedness and response as novel outbreaks occur, viruses evolve, and additional data become available.