The first chromosomal-level genome assembly and annotation of white suckerfish Remora albescens

作者：Chaowei Zhou, Qi Liu, Yinquan Qu, Ying Qiao, Tianxiang Gao, Danyang Wang · 发表于：Scientific Data · 年份：2024 · DOI：10.1038/s41597-024-03363-4 · 被引用次数：4 · 研究领域：Genomics and Phylogenetic Studies、Marine Sponges and Natural Products、Aquaculture disease management and microbiota

Remora albescens, also known as white suckerfish, recognized for its distinctive suction-cup attachment behavior and medicinal significance. In this study, we produced a high-quality chromosome-level genome assembly of R. albescens through the integration of 23.87 Gb PacBio long reads, 64.54 Gb T7 short reads, and 88.63 Gb Hi-C data. Initially, we constructed a contig-level genome assembly totaling 605.30 Mb with a contig N50 of 23.12 Mb. Subsequently, employing Hi-C technology, approximately 99.68% (603.38 Mb) of the contig-level genome was successfully assigned to 23 pseudo-chromosomes. Through the integration of homologous-based predictions, ab initio predictions, and RNA-sequencing methods, we successfully identified a comprehensive set of 22,445 protein-coding genes. Notably, 96.36% (21,629 genes) of these were effectively annotated with functional information. The genome assembly achieved an estimated completeness of 98.1% according to BUSCO analysis. This work promotes the applicability of the R. albescens genome, laying a solid foundation for future investigations into genomics, biology, and medicinal importance within this species.