Temporal landscape and translational regulation of A-to-I RNA editing in mouse retina development

作者：Ludong Yang, Yi Liang, Jiaqi Yang, Rui Zhang, Zhi Xie, Hongwei Wang · 发表于：BMC Biology · 年份：2024 · DOI：10.1186/s12915-024-01908-y · 被引用次数：8 · 研究领域：RNA regulation and disease、CRISPR and Genetic Engineering、Retinal Development and Disorders

BACKGROUND: The significance of A-to-I RNA editing in nervous system development is widely recognized; however, its influence on retina development remains to be thoroughly understood. RESULTS: In this study, we performed RNA sequencing and ribosome profiling experiments on developing mouse retinas to characterize the temporal landscape of A-to-I editing. Our findings revealed temporal changes in A-to-I editing, with distinct editing patterns observed across different developmental stages. Further analysis showed the interplay between A-to-I editing and alternative splicing, with A-to-I editing influencing splicing efficiency and the quantity of splicing events. A-to-I editing held the potential to enhance translation diversity, but this came at the expense of reduced translational efficiency. When coupled with splicing, it could produce a coordinated effect on gene translation. CONCLUSIONS: Overall, this study presents a temporally resolved atlas of A-to-I editing, connecting its changes with the impact on alternative splicing and gene translation in retina development.