Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS

作者：Jeanette Johnson, Ashley Tsang, Jacob T. Mitchell, David Zhou, Julia Bowden, Emily F. Davis-Marcisak, Thomas D. Sherman, Ted Liefeld, Melanie Loth, Loyal A. Goff, Jacquelyn W. Zimmerman, Ben Kinny-Köster, Elizabeth M. Jaffee, Pablo Tamayo, Jill P. Mesirov, Michael Reich, Elana J. Fertig, Genevieve Stein-O’Brien · 发表于：Nature Protocols · 年份：2023 · DOI：10.1038/s41596-023-00892-x · 被引用次数：25 · 研究领域：Single-cell and spatial transcriptomics、Gene expression and cancer classification、Gene Regulatory Network Analysis