Discovery of Early-Branching Wolbachia Reveals Functional Enrichment on Horizontally Transferred Genes

作者：Nicholas Weyandt, Shiva A. Aghdam, Amanda M. V. Brown · 发表于：Frontiers in Microbiology · 年份：2022 · DOI：10.3389/fmicb.2022.867392 · 被引用次数：21 · 研究领域：Insect symbiosis and bacterial influences、Nematode management and characterization studies

Wolbachia is a widespread endosymbiont of insects and filarial nematodes that profoundly influences host biology. Wolbachia has also been reported in rhizosphere hosts, where its diversity and function remain poorly characterized. The discovery that plant-parasitic nematodes (PPNs) host Wolbachia strains with unknown roles is of interest evolutionarily, ecologically, and for agriculture as a potential target for developing new biological controls. The goal of this study was to screen communities for PPN endosymbionts and analyze genes and genomic patterns that might indicate their role. Genome assemblies revealed 1 out of 16 sampled sites had nematode communities hosting a Wolbachia strain, designated w Tex, that has highly diverged as one of the early supergroup L strains. Genome features, gene repertoires, and absence of known genes for cytoplasmic incompatibility, riboflavin, biotin, and other biosynthetic functions placed w Tex between mutualist C + D strains and reproductive parasite A + B strains. Functional terms enriched in group L included protoporphyrinogen IX, thiamine, lysine, fatty acid, and cellular amino acid biosynthesis, while dN/dS analysis suggested the strongest purifying selection on arginine and lysine metabolism, and vitamin B6, heme, and zinc ion binding, suggesting these as candidate roles in PPN Wolbachia . Higher dN/dS pathways between group L, w Pni from aphids, w Fol from springtails, and w CfeT from cat fleas suggested distinct functional changes...