STOmicsDB: a database of Spatial Transcriptomic data

作者：Zhicheng Xu, Weiwen Wang, Tao Yang, Jing Chen, Yan Huang, Joshua Gould, Wensi Du, Fan Yang, Ling Li, Tingting Lai, Cong Hua, Shoujie Hu, Jia Cai, Honge Li, Lijin You, Wenjun Zeng, Bo Wang, Longqi Liu, Xun Xu, Fengzhen Chen, Xiaofeng Wei · 发表于：bioRxiv (Cold Spring Harbor Laboratory) · 年份：2022 · DOI：10.1101/2022.03.11.481421 · 被引用次数：31 · 研究领域：Single-cell and spatial transcriptomics、Immune cells in cancer、Gene expression and cancer classification

ABSTRACT Recent technological development in spatial transcriptomics allows researchers to measure gene expression of cells and their spatial locations at the almost single-cell level, which generates detailed biological insight into biological processes. However, specialized spatial transcriptomics databases are rare. Here, we present the Spatial TranscriptOmics DataBase (STOmicsDB), a user-friendly database with multifunctions including search of relevant publications and tools, public dataset visualization, customized specialized databases, new data archive, and online analysis. The current version of STOmicsDB consists of 141 curated spatial transcript datasets covering 12 species, and includes 5,618 spatial multi-omics publications and 674 tools. STOmicsDB is freely accessible at https://db.cngb.org/stomics/ .