Rice bioinformatics in the genomic era: Status and perspectives

作者：Lei Jia, Lingjuan Xie, Sangting Lao, Qian‐Hao Zhu, Longjiang Fan · 发表于：The Crop Journal · 年份：2021 · DOI：10.1016/j.cj.2021.03.003 · 被引用次数：13 · 研究领域：Genomics and Phylogenetic Studies、Genetic Mapping and Diversity in Plants and Animals、Chromosomal and Genetic Variations

Rice is one of cereal crops and a model species for monocots. Since the release of the first draft rice genome sequences in 2002, considerable progress has been achieved in rice genomic researches, thanks to rapid development and efficient utilization of bioinformatics methods and tools. In this review, we summarize the progress of studies of rice genome sequencing and other omics and introduce the well-maintained bioinformatics databases and tools developed for rice genome resources and breeding. After reviewing the history of rice bioinformatics, we use single-cell sequencing and machine learning as examples showing how bioinformatics integrates emerging technologies and how it continues to develop for future rice research.