Complete chloroplast genome sequencing of ten wild Fragaria species in China provides evidence for phylogenetic evolution of Fragaria

作者：Jian Sun, Rui Sun, Huabo Liu, Linlin Chang, Shuangtao Li, Mizhen Zhao, Carol Shennan, Jiajun Lei, Jing Dong, Chuanfei Zhong, Li Xue, Yongshun Gao, Guixia Wang, Yuntao Zhang · 发表于：Genomics · 年份：2021 · DOI：10.1016/j.ygeno.2021.01.027 · 被引用次数：36 · 研究领域：Plant Disease Resistance and Genetics、Berry genetics and cultivation research、Plant Pathogens and Fungal Diseases

Complete chloroplast genomes of ten wild Fragaria species native to China were sequenced. Phylogenetic analysis clustered Fragaria species into two clades: The south clade (F. iinumae, F. chinensis, F. pentaphylla, F. nilgerrensis, F. daltoniana, F. corymbosa, F. moupinensis, F. tibetica, F. nipponica, F. gracilis, and F. nubicola and north clade (F. viridis, F. orientalis, F. moschata, F. mandshurica, F. vesca, F. chiloensis, F. virginiana, and F. × ananassa), while F. iinumae is the oldest extant species. Molecular clock analysis suggested present Fragaria species share a common ancestor 3.57 million years ago (Ma), F. moschata and octoploid species evolve 0.89 and 0.97 Ma, respectively, but F. moschata be not directly involved in current octoploid species formation. Drastic global temperature change since the Palaeocene-Eocene, approx. 55 Ma, especially during uplifting of the Qinghai-Tibet plateau and quaternary glaciation may have driven the formation of Fragaria, separation of two groups and polyploidization.