Genome‐wide expression profiling analysis to identify key genes in the anti‐HIV mechanism of CD4+and CD8+T cells

作者：Lijie Gao, Yunqi Wang, Yi Li, Ya Dong, Aimin Yang, Jie Zhang, Fengying Li, Rongqiang Zhang · 发表于：Journal of Medical Virology · 年份：2018 · DOI：10.1002/jmv.25071 · 被引用次数：15 · 研究领域：Immune Cell Function and Interaction、HIV Research and Treatment、Inflammasome and immune disorders

Comprehensive bioinformatics analyses were performed to explore the key biomarkers in response to HIV infection of CD4 + and CD8 + T cells. The numbers of CD4 + and CD8 + T cells of HIV infected individuals were analyzed and the GEO database (GSE6740) was screened for differentially expressed genes (DEGs) in HIV infected CD4 + and CD8 + T cells. Gene Ontology enrichment, KEGG pathway analyses, and protein‐protein interaction (PPI) network were performed to identify the key pathway and core proteins in anti‐HIV virus process of CD4 + and CD8 + T cells. Finally, we analyzed the expressions of key proteins in HIV‐infected T cells (GSE6740 dataset) and peripheral blood mononuclear cells(PBMCs) (GSE511 dataset). 1) CD4 + T cells counts and ratio of CD4 + /CD8 + T cells decreased while CD8 + T cells counts increased in HIV positive individuals; 2) 517 DEGs were found in HIV infected CD4 + and CD8 + T cells at acute and chronic stage with the criterial of P ‐value <0.05 and fold change (FC) ≥2; 3) In acute HIV infection, type 1 interferon (IFN‐1) pathway might played a critical role in response to HIV infection of T cells. The main biological processes of the DEGs were response to virus and defense response to virus. At chronic stage, ISG15 protein, in conjunction with IFN‐1 pathway might play key roles in anti‐HIV responses of CD4 + T cells; and 4) The expression of ISG15 increased in both T cells and PBMCs after HIV infection. Gene expression profile of CD4 + and CD8 + T cells ...