MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ

作者：David Legland, Ignacio Arganda‐Carreras, Philippe Andrey · 发表于：Bioinformatics · 年份：2016 · DOI：10.1093/bioinformatics/btw413 · 被引用次数：1478 · 研究领域：Cell Image Analysis Techniques、Plant nutrient uptake and metabolism、Plant Molecular Biology Research

MOTIVATION: Mathematical morphology (MM) provides many powerful operators for processing 2D and 3D images. However, most MM plugins currently implemented for the popular ImageJ/Fiji platform are limited to the processing of 2D images. RESULTS: The MorphoLibJ library proposes a large collection of generic tools based on MM to process binary and grey-level 2D and 3D images, integrated into user-friendly plugins. We illustrate how MorphoLibJ can facilitate the exploitation of 3D images of plant tissues. AVAILABILITY AND IMPLEMENTATION: MorphoLibJ is freely available at http://imagej.net/MorphoLibJ CONTACT: david.legland@nantes.inra.frSupplementary information: Supplementary data are available at Bioinformatics online.