Amplified Analysis of DNA by the Autonomous Assembly of Polymers Consisting of DNAzyme Wires

作者：Fuan Wang, Johann Elbaz, Ron Orbach, Nimrod Magen, Itamar Willner · 发表于：Journal of the American Chemical Society · 年份：2011 · DOI：10.1021/ja2076789 · 被引用次数：339 · 研究领域：Advanced biosensing and bioanalysis techniques、Biosensors and Analytical Detection、DNA and Nucleic Acid Chemistry

A systematic study of the amplified optical detection of DNA by Mg(2+)-dependent DNAzyme subunits is described. The use of two DNAzyme subunits and the respective fluorophore/quencher-modified substrate allows the detection of the target DNA with a sensitivity corresponding to 1 × 10(-9) M. The use of two functional hairpin structures that include the DNAzyme subunits in a caged, inactive configuration leads, in the presence of the target DNA, to the opening of one of the hairpins and to the activation of an autonomous cross-opening process of the two hairpins, which affords polymer DNA wires consisting of the Mg(2+)-dependent DNAzyme subunits. This amplification paradigm leads to the analysis of the target DNA with a sensitivity corresponding to 1 × 10(-14) M. The amplification mixture composed of the two hairpins can be implemented as a versatile sensing platform for analyzing any gene in the presence of the appropriate hairpin probe. This is exemplified with the detection of the BRCA1 oncogene.