FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species

作者：Stefan Priebe, Christian Kreisel, Fabian Horn, Reinhard Guthke, Jörg Linde · 发表于：Bioinformatics · 年份：2014 · DOI：10.1093/bioinformatics/btu627 · 被引用次数：249 · 研究领域：Bioinformatics and Genomic Networks、Biomedical Text Mining and Ontologies、Fungal and yeast genetics research

SUMMARY: Systematically extracting biological meaning from omics data is a major challenge in systems biology. Enrichment analysis is often used to identify characteristic patterns in candidate lists. FungiFun is a user-friendly Web tool for functional enrichment analysis of fungal genes and proteins. The novel tool FungiFun2 uses a completely revised data management system and thus allows enrichment analysis for 298 currently available fungal strains published in standard databases. FungiFun2 offers a modern Web interface and creates interactive tables, charts and figures, which users can directly manipulate to their needs. AVAILABILITY AND IMPLEMENTATION: FungiFun2, examples and tutorials are publicly available at https://elbe.hki-jena.de/fungifun/. CONTACT: steffen.priebe@hki-jena.de or joerg.linde@hki-jena.de.