pIQPNNI: parallel reconstruction of large maximum likelihood phylogenies

作者：Bùi Quang Minh, Lê Sỹ Vinh, A. von Haeseler, Heiko A. Schmidt · 发表于：Computer applications in the biosciences · 年份：2005 · DOI：10.1093/bioinformatics/bti594 · 被引用次数：83 · 研究领域：Genomics and Phylogenetic Studies、Algorithms and Data Compression、Genetic diversity and population structure

Summary: IQPNNI is a program to infer maximum-likelihood phylogenetic trees from DNA or protein data with a large number of sequences. We present an improved and MPI-parallel implementation showing very good scaling and speedup behavior. Availability: IQPNNI (http://www.bi.uni-duesseldorf.de/software/iqpnni) is written in C++, executable on UNIX/Linux, Windows and MacOS systems. (Free) MPI libraries can be found at http://www.lam-mpi.org/mpi/implementations/. Contact: [email protected]