CD-HIT Suite: a web server for clustering and comparing biological sequences

作者：Ying Huang, Beifang Niu, Ying Gao, LiMin Fu, Weizhong Li · 发表于：Bioinformatics · 年份：2010 · DOI：10.1093/bioinformatics/btq003 · 被引用次数：2767 · 研究领域：Genomics and Phylogenetic Studies、Bioinformatics and Genomic Networks、Gene expression and cancer classification

UNLABELLED: CD-HIT is a widely used program for clustering and comparing large biological sequence datasets. In order to further assist the CD-HIT users, we significantly improved this program with more functions and better accuracy, scalability and flexibility. Most importantly, we developed a new web server, CD-HIT Suite, for clustering a user-uploaded sequence dataset or comparing it to another dataset at different identity levels. Users can now interactively explore the clusters within web browsers. We also provide downloadable clusters for several public databases (NCBI NR, Swissprot and PDB) at different identity levels. AVAILABILITY: Free access at http://cd-hit.org