Identification of patterns in biological sequences at the ALGGEN server: PROMO and MALGEN

作者：Domènec Farré · 发表于：Nucleic Acids Research · 年份：2003 · DOI：10.1093/nar/gkg605 · 被引用次数：1060 · 研究领域：Genomics and Phylogenetic Studies、Algorithms and Data Compression、Genomics and Chromatin Dynamics

In this paper we present several web-based tools to identify conserved patterns in sequences. In particular we present details on the functionality of PROMO version 2.0, a program for the prediction of transcription factor binding site in a single sequence or in a group of related sequences and, of MALGEN, a tool to visualize sequence correspondences among long DNA sequences. The web tools and associated documentation can be accessed at http://www.lsi.upc.es/~alggen (RESEARCH link).